respirometr

An R toolbox for analysing respirometry data

The primary aim of the respirometr package is to provide a standardised workflow for analysing respirometry data in a tidyverse-friendly syntax.

Installation

You can install the development version of respirometr with:

Type	Source	Command
Development	R-universe	install.packages('respirometr', repos = c('https://roaldarbol.r-universe.dev', 'https://cloud.r-project.org'))
Development	Github	renv::install("roaldarbol/respirometr")

Once you have installed the package, you can load it with:

library("respirometr")

Documentation

See our docs to go through the workflow, one-by-one:

• Introduction to respirometr
• Read respirometry data
• Combine with movement data

Status

Warning

🏗️ The package is currently in early development and the interface is subject to change. Feel free to play around and provide feedback.

Contribute

If your favourite type of respirometry data or model of respirometer is not currently supported, we’d love to get a sample of your data to support it!

If you enjoy the package, please make sure to cite it. If you find a bug, feel free to open an issue.

Citation

To cite respirometr in publications use:

citation("respirometr")
#> To cite package 'respirometr' in publications use:
#> 
#>   Roald-Arbøl M (2024). "respirometr: An R toolbox for analysing
#>   respirometry data." <http://www.roald-arboel.com/respirometr/>.
#> 
#> A BibTeX entry for LaTeX users is
#> 
#>   @Misc{roaldarbol:2024,
#>     title = {respirometr: An R toolbox for analysing respirometry data},
#>     author = {Mikkel Roald-Arbøl},
#>     year = {2024},
#>     url = {http://www.roald-arboel.com/respirometr/},
#>     abstract = {An R toolbox for analysing respirometry data.},
#>     version = {0.1.0},
#>   }